In November 2016 John moved to a lectureship level bioinformatics position in York
Publications
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Arias, M. et al. How do predators generalize warning signals in simple and complex prey communities? Insights from a videogame. Proceedings of the Royal Society B: Biological Sciences 287, 20200014 (2020).
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Edelman, N. B. et al. Genomic architecture and introgression shape a butterfly radiation. Science 366, 594–599 (2019).
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Darragh, K. et al. A novel terpene synthase produces an anti-aphrodisiac pheromone in the butterfly Heliconius melpomene. bioRxiv 779678 (2019) http://doi.org/10.1101/779678.
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Merrill, R. M. et al. Genetic dissection of assortative mating behavior. PLOS Biology 17, e2005902 (2019).
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Martin, S. H., Davey, J. W., Salazar, C. & Jiggins, C. D. Recombination rate variation shapes barriers to introgression across butterfly genomes. PLOS Biology 17, e2006288 (2019).
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Pinharanda, A. et al. Sexually dimorphic gene expression and transcriptome evolution provide mixed evidence for a fast-Z effect in Heliconius. Journal of Evolutionary Biology 32, 194–204 (2019).
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Arias, M. et al. Generalisation behaviour of predators toward warning signals displayed by harmful prey: answers from a videogame played by humans. bioRxiv 409557 (2018) http://doi.org/10.1101/409557.
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Pinharanda, A., Martin, S. H., Barker, S. L., Davey, J. W. & Jiggins, C. D. The comparative landscape of duplications in Heliconius melpomene and Heliconius cydno. Heredity 118, 78–87 (2017).
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Davey, J. W. et al. No evidence for maintenance of a sympatric Heliconius species barrier by chromosomal inversions. Evolution Letters 1–3, 138–154 (2017).
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Davey, J. W. et al. Major Improvements to the Heliconius melpomene Genome Assembly Used to Confirm 10 Chromosome Fusion Events in 6 Million Years of Butterfly Evolution. G3 g3.115.023655 (2016) http://doi.org/10.1534/g3.115.023655.
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Merrill, R. M. et al. The diversification of Heliconius butterflies: what have we learned in 150 years? J. Evol. Biol. 28, 1417–1438 (2015).
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Keightley, P. D. et al. Estimation of the spontaneous mutation rate in Heliconius melpomene. Mol Biol Evol msu302 (2014) http://doi.org/10.1093/molbev/msu302.
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Martin, S. H., Davey, J. W. & Jiggins, C. D. Evaluating the Use of ABBA–BABA Statistics to Locate Introgressed Loci. Mol Biol Evol 32, 244–257 (2014).
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Nadeau, N. J. et al. Genome-wide patterns of divergence and gene flow across a butterfly radiation. Mol Ecol 22, 814–826 (2013).
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Nadeau, N. J. et al. Genomic islands of divergence in hybridizing Heliconius butterflies identified by large-scale targeted sequencing. Philos Trans R Soc Lond B Biol Sci 367, 343–353 (2012).
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Baxter, S. W. et al. Linkage mapping and comparative genomics using next-generation RAD sequencing of a non-model organism. PLoS ONE 6, e19315 (2011).